Download Biological Sequence Analysis Using the SeqAn C++ Library by Andreas Gogol-Döring,Knut Reinert PDF

By Andreas Gogol-Döring,Knut Reinert

An Easy-to-Use examine instrument for set of rules trying out and Development

Before the SeqAn venture, there has been sincerely a scarcity of accessible implementations in series research, even for normal projects. Implementations of wanted algorithmic parts have been both unavailable or difficult to entry in third-party monolithic software program items. Addressing those matters, the builders of SeqAn created a complete, easy-to-use, open resource C++ library of effective algorithms and knowledge buildings for the research of organic sequences. Written via the founders of this venture, Biological series research utilizing the SeqAn C++ Library covers the SeqAn library, its documentation, and the aiding infrastructure.

The first a part of the e-book describes the final library layout. It introduces organic series research difficulties, discusses the good thing about utilizing software program libraries, summarizes the layout ideas and objectives of SeqAn, information the most programming options utilized in SeqAn, and demonstrates the appliance of those strategies in a number of examples. concentrating on the elements supplied by means of SeqAn, the second one half explores easy performance, series facts buildings, alignments, trend and motif looking, string indices, and graphs. The final half illustrates functions of SeqAn to genome alignment, consensus series in meeting tasks, suffix array development, and more.

This convenient ebook describes a ordinary library of effective facts kinds and algorithms for series research in computational biology. SeqAn permits not just the implementation of recent algorithms, but additionally the sound research and comparability of latest algorithms.

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